The Manchester United player is ranked 41st, whilst the summer arrival at Chelsea is down in 46th.
Some might be surprised by the ordering considering Mata was allowed to leave Chelsea, whilst Fabregas was brought in at Stamford Bridge and during his short spell back in the Premier League has been arguably the stand-out player.
Iker Casillas' fall from grace continues after his shocking World Cup performances. The Real Madrid stopper is ranked as the 47th best player, behind Tottenham goalkeeper Hugo Lloris who is at number 45.
To coincide with the release of the player rankings, Fifa makers EA Sports have also put out a video featuring a few players discussing how they are rated and it seems they take it rather seriously.
Rio Ferdinand even offers to come and talk to the makers of the game as he implores them: "Guys at Fifa if you are watching, can you actually put the real stats on the Manchester United players."
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